BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019C04LP1|AL427454
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig622 1152 0.0
>3x_Contig622
Length = 1958
Score = 1152 bits (579), Expect = 0.0
Identities = 603/615 (98%)
Strand = Plus / Minus
Query: 1 gatcaccaagaagttcatgagtgacccggtgaagatattggttaagcgggatgagatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gatcaccaagaagttcatgagtgacccggtgaagatattggttaagcgggatgagatatc 569
Query: 61 cttggacgtgataaagcaatattatgtggatgtagaaaaggaagaatggaagtttgatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttggacgtgataaagcaatattatgtggatgtagaaaaggaagaatggaagtttgatac 509
Query: 121 actctgtgatctatacgattcgttaacgataacacaatgtgtgatattctgtaatacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 actctgtgatctatacgattcgttaacgataacacaatgtgtgatattctgtaatacaag 449
Query: 181 gaaaaaagtggattggttatccaggaagttgacacagacgaatttctctgtgtcctcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaaaaagtggattggttatccaggaagttgacacagacgaatttctctgtgtcctcaat 389
Query: 241 gcacggtgacatgaaacaggaagaacgtgatcaagtgatgaatgatttcaggagtggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcacggtgacatgaaacaggaagaacgtgatcaagtgatgaatgatttcaggagtggaaa 329
Query: 301 agccagggtgctaatatcgacagacgtgtgggctcgtggtatcgatgtccagcagatctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agccagggtgctaatatcgacagacgtgtgggctcgtggtatcgatgtccagcagatctc 269
Query: 361 attggtgataaactacgatataccagataatctagagaactatatccatcgtattggtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attggtgataaactacgatataccagataatctagagaactatatccatcgtattggtag 209
Query: 421 atccggacggtttggacgtaaaggtgttgcaataaatttcatcacgaaggaggaaagacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atccggacggtttggacgtaaaggtgttgcaataaatttcatcacgaaggaggaaagacc 149
Query: 481 caaattgaaagagatcgaatcgcactatagaattaagatcaaaccaactcctgcaaattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 caaattgaaagagatcgaatcgcactatagaattaagatcaaaccaactcctgcaaattt 89
Query: 541 agaagagttgtcgtgagactatgggatatatatwtwtttttktttktttagatatncntn 600
||||||||||||||||||||||||||||||||| | | | | | | | ||||||| | |
Sbjct: 88 agaagagttgtcgtgagactatgggatatatatatatatatgtatgtatagatatacata 29
Query: 601 tnctacaatttacgg 615
| |||||||||||||
Sbjct: 28 tgctacaatttacgg 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6530
Number of Sequences: 1807
Number of extensions: 6530
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (99.9 bits)